PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000616.1_g00015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 166aa    MW: 18848.6 Da    PI: 9.9677
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000616.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000164062123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C k F++   L +H  +H
  Itr_sc000616.1_g00015.1 40 FECKTCQKKFKSFQALGSHRASH 62
                             89*****************9998 PP

2zf-C2H210.60.001881103123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp Cg  F     L  H+r+H
  Itr_sc000616.1_g00015.1  81 HECPVCGLEFGLGQALGGHMRKH 103
                              79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.454067IPR007087Zinc finger, C2H2
SMARTSM003550.0874062IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.16E-640103No hitNo description
PfamPF139122.8E-94064IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PfamPF139124.2E-1080106IPR007087Zinc finger, C2H2
PROSITE profilePS501579.43281113IPR007087Zinc finger, C2H2
SMARTSM003550.1981103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MTLKRSREEV AAEAEALAMA NCLVLLSRPA EKTPPSGWEF ECKTCQKKFK SFQALGSHRA  60
SHKRPKHLEH NNNNVNIKKR HECPVCGLEF GLGQALGGHM RKHRDQLHSD HKKSPDLLTV  120
MTVKNEEHSA GIKKKNEGWF DLNFTLLGND STVHRRFVPT TLDLFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ424102e-26ZAT12_ARATH; Zinc finger protein ZAT12
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.12e-26C2H2 family protein